Proteins are complex macromolecules that have tertiary and quaternary
structural features that may be essential to their biological function
and stability. Properly folded proteins are often complexed with ligands
and/or other proteins in the cell or within biological membranes.
Protein complexes also exist in biological fluids such as serum and
cerebral spinal fluid where they may be involved in a variety of
physiological or disease-related processes. To gain insight into their
structure/function relationships, Larial uses a variety of bioanalytical
techniques to monitor changes in protein conformation and interaction
kinetics. Often, a single technology is insufficient at addressing all
the possible criteria (composition, yield, purity, functionality etc)
that a research or quality control scientist must determine prior to
moving forward. A variety of bioanalysis techniques such as mass
spectrometry, gel electrophoresis and SPR biosensing can be used to
evaluate crude or refined protein samples destined for further
processing. Scientific algorithms, designed to provide information on
complex biological systems or product formulations, require sufficient
analytical support at various stages so informed decisions can be made
by scientists and managers of R&D programs.
For example, changes in membrane protein conformation can be monitored
by partial proteolytic digestion followed by purification and peptide
mapping of cleavage sites using mass spectrometry. Similarly,
hydrodynamic measurements of a protein's size by gel filtration HPLC or
analytical ultracentrifugation provides information regarding changes in
a size, shape or interaction with ligands and other proteins. SPR
biosensing can be used to measure kinetic interaction rates between
proteins or with ligands to evaluate changes in affinities or test the
effects of mutations on binding site conformations. The isolation of
protein complexes from cells/tissues by co-immunoprecipitation followed
by tryptic digestion and mass spectrometry provides a useful technique
for identifying and characterizing stable interactions. Generating
chemically-tagged protein constructs for in vitro studies (eg., FRET,
TRF etc) on protein-protein interactions or measurements of
catalytically-induced changes in protein conformation is another support
service Larial provides to its clients. Our current portfolio of
in-house laboratory assays were designed to provide specifications (eg.,
antibody-antigen affinity, functional activity, purity) on some of the
custom biologicals Larial produces for clients in the academic, biotech,
pharma and fermentation sectors.